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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
22
ATAC-seq
17
DNase-seq
3
Hi-C
1
FAIRE-seq
Assay category
40
DNA accessibility
36
DNA binding
3
3D chromatin structure
Target of assay
29
histone
29
histone modification
15
narrow histone mark
14
broad histone mark
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
18
June, 2019
14
December, 2017
14
October, 2019
14
September, 2018
5
September, 2017
4
May, 2019
4
November, 2017
3
August, 2017
3
October, 2022
Available data
316
bam
300
bigWig
256
fastq
155
tsv
151
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
79
Homo sapiens
Biosample type
64
primary cell
14
in vitro differentiated cells
1
cell line
Organ
358
liver
127
brain
104
kidney
94
heart
94
pancreas
84
limb
83
vasculature
79
blood vessel
79
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
76
AMP
3
HPAP
Genome assembly (visualization)
75
GRCh38
73
hg19
Lab
76
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
3
audit script error
month_released!
June, 2018
BIOSAMPLE
ASSAY
79 results
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ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
primary cell
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
1
pancreatic alpha cell
6
1
pancreatic acinar cell
5
1
kidney epithelial cell
4
1
+ See 12 more…
in vitro differentiated cells
hepatocyte
14
cell line
glomerular visceral epithelial cell
1
See all biosamples
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