Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
total RNA-seq
22
ChIP-seq
20
ATAC-seq
6
MeRIP-seq
2
Capture-C
1
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
35
Transcription
22
DNA binding
20
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
15
histone
15
histone modification
9
narrow histone mark
8
control
6
broad histone mark
3
nucleotide modification
2
RNA binding protein
2
transcription factor
Date released
26
February, 2021
22
May, 2021
16
November, 2019
6
November, 2020
5
March, 2020
4
December, 2017
June, 2019
3
May, 2019
2
August, 2021
1
July, 2018
1
July, 2019
1
October, 2019
Available data
59
bam
54
bigWig
36
tsv
19
bed narrowPeak
5
fastq
2
bigBed narrowPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
87
Homo sapiens
Biosample type
76
cell line
6
primary cell
5
in vitro differentiated cells
Organ
87
epithelium
84
bone element
81
pancreas
19
kidney
7
connective tissue
6
embryo
3
brain
1
adipose tissue
1
heart
1
liver
1
stomach
1
urinary bladder
Project
83
AMP
4
T1D
Genome assembly (visualization)
58
hg19
54
GRCh38
Lab
81
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
87
inconsistent ontology term
5
audit script error
Audit category:
1
inconsistent control read length
month_released!
June, 2019
BIOSAMPLE
ASSAY
87 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
MeRIP-seq
Capture-C
Hi-C
RRBS
single cell RNA-seq
cell line
EndoC_BH1
33
15
19
6
2
1
primary cell
kidney epithelial cell
3
Liver fetal (hepatocyte)
1
epithelial cell of proximal tubule
1
pancreatic acinar cell
1
in vitro differentiated cells
Hepatic endoderm
4
intermediate endothelial cell
1
Download