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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
total RNA-seq
12
ATAC-seq
3
single cell RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
42
Transcription
12
DNA accessibility
Date released
80
May, 2022
61
September, 2018
52
February, 2023
35
October, 2019
33
April, 2018
33
July, 2018
32
February, 2021
29
August, 2017
26
May, 2021
20
June, 2019
19
December, 2017
19
September, 2020
16
November, 2019
13
July, 2019
7
August, 2020
6
August, 2021
6
December, 2019
6
March, 2020
6
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
40
fastq
12
bed narrowPeak
5
tsv
3
bam
3
bigWig
Organism
54
Homo sapiens
Biosample type
40
primary cell
14
tissue
1
cell line
Organ
59
pancreas
55
epithelium
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
15
connective tissue
8
bone element
8
skeleton
2
adipose tissue
1
brain
Project
37
HPAP
18
AMP
Genome assembly (visualization)
15
hg19
3
GRCh38
Lab
37
Klaus Kaestner, Upenn
18
AMP-T2D consortium
BIOSAMPLE
ASSAY
55 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
27
2
pancreatic beta cell
10
pancreatic acinar cell
1
tissue
pigmented layer of retina
2
12
cell line
EndoC_BH1
1
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