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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
total RNA-seq
28
ATAC-seq
4
ChIP-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
45
Transcription
28
DNA accessibility
4
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
1
control
1
transcription factor
Date released
80
May, 2022
61
September, 2018
52
February, 2023
35
October, 2019
33
April, 2018
33
July, 2018
32
February, 2021
29
August, 2017
26
May, 2021
20
June, 2019
19
December, 2017
19
September, 2020
16
November, 2019
13
July, 2019
7
August, 2020
6
August, 2021
6
December, 2019
6
March, 2020
6
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
37
fastq
15
bed narrowPeak
10
bam
9
bigWig
8
tsv
3
tagAlign
Organism
77
Homo sapiens
Biosample type
37
primary cell
22
cell line
14
tissue
5
in vitro differentiated cells
Organ
117
pancreas
78
epithelium
39
heart
35
artery
35
blood vessel
35
vasculature
31
eye
16
connective tissue
9
bone element
8
skeleton
2
embryo
1
adipose tissue
1
bone marrow
1
brain
1
thymus
Project
40
AMP
37
HPAP
1
T1D
Genome assembly (visualization)
21
hg19
9
GRCh38
Lab
41
AMP-T2D consortium
37
Klaus Kaestner, Upenn
Audit category:
22
inconsistent ontology term
BIOSAMPLE
ASSAY
78 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
27
pancreatic beta cell
10
cell line
EndoC_BH1
4
16
1
1
tissue
pigmented layer of retina
2
12
in vitro differentiated cells
pancreatic PP cell
3
endothelial cell
1
intermediate endothelial cell
1
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