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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
total RNA-seq
13
ATAC-seq
13
ChIP-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
Assay category
40
Transcription
13
DNA accessibility
13
DNA binding
1
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
80
May, 2022
61
September, 2018
52
February, 2023
35
October, 2019
33
April, 2018
33
July, 2018
32
February, 2021
29
August, 2017
26
May, 2021
20
June, 2019
19
December, 2017
19
September, 2020
16
November, 2019
13
July, 2019
7
August, 2020
6
August, 2021
6
December, 2019
6
March, 2020
6
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
37
fastq
24
bed narrowPeak
15
bam
12
bigWig
3
tsv
1
bedpe bed3+
1
hic
Organism
67
Homo sapiens
Biosample type
37
primary cell
17
cell line
14
tissue
Organ
111
pancreas
68
epithelium
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
15
connective tissue
8
bone element
8
skeleton
2
adipose tissue
1
brain
Project
37
HPAP
31
AMP
Genome assembly (visualization)
26
hg19
13
GRCh38
Lab
37
Klaus Kaestner, Upenn
31
AMP-T2D consortium
Audit category:
16
inconsistent ontology term
BIOSAMPLE
ASSAY
68 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
CRISPR genome editing followed by sgRNA sequencing
Hi-C
primary cell
pancreatic alpha cell
27
pancreatic beta cell
10
cell line
EndoC_BH1
1
1
13
1
1
tissue
pigmented layer of retina
2
12
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