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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
3
DNase-seq
3
total RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
Hi-C
Assay category
18
DNA binding
5
DNA accessibility
3
Transcription
1
3D chromatin structure
Target of assay
18
histone
18
histone modification
10
broad histone mark
8
narrow histone mark
Date released
61
September, 2018
33
April, 2018
33
July, 2018
27
October, 2019
26
February, 2021
17
August, 2017
16
December, 2017
14
November, 2019
13
July, 2019
12
February, 2023
12
June, 2019
9
May, 2021
6
March, 2020
6
November, 2017
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
October, 2022
2
October, 2018
1
June, 2018
Available data
26
bam
25
bigWig
21
bed narrowPeak
14
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
3
tsv
2
bed bed3+
1
hic
1
tar
Organism
27
Homo sapiens
Biosample type
25
primary cell
2
cell line
Organ
78
brain
52
limb
37
blood vessel
37
vasculature
31
nerve
27
epithelium
22
kidney
21
artery
16
vein
8
heart
8
pancreas
7
liver
3
connective tissue
1
adipose tissue
1
pituitary gland
Project
27
AMP
Genome assembly (visualization)
27
hg19
23
GRCh38
Lab
27
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
27 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
12
2
1
1
epithelial cell of proximal tubule
6
Liver fetal (hepatocyte)
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
cell line
glomerular visceral epithelial cell
1
1
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