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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
5
DNase-seq
4
total RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
Hi-C
Assay category
29
DNA binding
7
DNA accessibility
4
Transcription
1
3D chromatin structure
Target of assay
26
histone
26
histone modification
15
broad histone mark
11
narrow histone mark
3
control
Date released
321
November, 2017
194
May, 2020
120
May, 2022
83
August, 2017
67
December, 2017
61
September, 2018
53
November, 2018
52
February, 2023
41
October, 2019
37
August, 2021
35
February, 2021
33
April, 2018
33
July, 2018
26
May, 2021
21
July, 2019
21
June, 2019
19
September, 2020
16
November, 2019
9
March, 2020
7
August, 2020
6
December, 2019
6
November, 2020
5
January, 2019
5
May, 2019
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
December, 2018
1
February, 2020
1
June, 2018
Available data
38
bam
31
bigWig
26
bed narrowPeak
14
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
4
tsv
2
bed bed3+
1
hic
1
tar
Organism
41
Homo sapiens
Biosample type
33
primary cell
6
tissue
2
cell line
Organ
86
brain
69
limb
47
blood vessel
47
vasculature
42
nerve
35
epithelium
30
kidney
26
artery
21
eye
21
vein
18
pancreas
8
heart
7
liver
4
connective tissue
4
gonad
4
ovary
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
41
AMP
Genome assembly (visualization)
33
hg19
29
GRCh38
Lab
41
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
41 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
Liver fetal (hepatocyte)
1
tissue
liver
5
1
cell line
glomerular visceral epithelial cell
1
1
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