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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
total RNA-seq
109
ChIP-seq
103
ATAC-seq
70
single cell RNA-seq
47
WGBS
15
DNase-seq
6
MeRIP-seq
6
RRBS
4
Hi-C
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
15
DNA accessibility
Date released
12
June, 2019
3
October, 2019
Available data
13
bam
13
bed narrowPeak
13
bigBed narrowPeak
13
bigWig
12
bed bed3+
12
bed broadPeak
12
bigBed broadPeak
Organism
15
Homo sapiens
Biosample type
14
primary cell
1
cell line
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
blood vessel
9
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
15
AMP
Genome assembly (visualization)
13
GRCh38
8
hg19
Lab
15
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
15 results
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DNase-seq
primary cell
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
+ See 5 more…
cell line
glomerular visceral epithelial cell
1
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