Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ATAC-seq
53
total RNA-seq
47
WGBS
8
Hi-C
6
MeRIP-seq
5
RRBS
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
69
DNA accessibility
53
Transcription
52
DNA methylation
8
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
80
May, 2022
38
February, 2023
19
September, 2020
16
May, 2021
7
August, 2020
7
July, 2019
6
February, 2021
6
November, 2020
3
March, 2020
3
October, 2019
3
October, 2022
2
August, 2021
1
December, 2019
1
November, 2019
Available data
bam
298
bigWig
257
fastq
154
tsv
136
bed narrowPeak
80
zippedFastqFolder
73
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
20
bed bed3+
7
tagAlign
6
hic
5
bed bedMethyl
5
bedpe bed3+
5
bigBed bedMethyl
3
cool
2
hdf5
1
tar
Organism
191
Homo sapiens
Biosample type
163
primary cell
28
cell line
1
tissue
Organ
257
pancreas
210
kidney
207
epithelium
142
heart
110
liver
93
bone element
91
connective tissue
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
152
HPAP
40
AMP
Genome assembly (visualization)
15
hg19
10
GRCh38
Lab
152
Klaus Kaestner, Upenn
34
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
28
inconsistent ontology term
5
audit script error
organ_slims!
eye
files.file_type!
bam
BIOSAMPLE
ASSAY
192 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
WGBS
Hi-C
MeRIP-seq
RRBS
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
+ See 8 more…
cell line
EndoC_BH1
18
1
6
2
1
tissue
renal glomerulus
1
See all biosamples
Download