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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
ATAC-seq
18
DNase-seq
1
FAIRE-seq
Assay category
196
Transcription
121
DNA accessibility
110
DNA binding
52
DNA methylation
7
3D chromatin structure
Date released
39
May, 2022
16
May, 2021
14
September, 2018
13
June, 2019
12
February, 2023
7
August, 2020
6
October, 2019
5
September, 2017
3
August, 2017
3
September, 2020
2
March, 2020
1
November, 2019
Available data
52
bed narrowPeak
51
bigWig
40
bam
39
bigBed narrowPeak
39
zippedFastqFolder
32
fastq
15
bed bed3+
15
bed broadPeak
15
bigBed broadPeak
1
tar
1
tsv
Organism
121
Homo sapiens
Biosample type
89
primary cell
20
cell line
12
tissue
Organ
173
pancreas
163
kidney
123
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
34
connective tissue
32
eye
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
72
AMP
49
HPAP
Genome assembly (visualization)
49
GRCh38
48
hg19
Lab
72
AMP-T2D consortium
49
Klaus Kaestner, Upenn
Audit category:
20
inconsistent ontology term
organ_slims!
liver
BIOSAMPLE
ASSAY
121 results
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ATAC-seq
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
endothelial cell of umbilical vein
2
1
+ See 11 more…
cell line
EndoC_BH1
19
glomerular visceral epithelial cell
1
tissue
pigmented layer of retina
12
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