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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
total RNA-seq
25
ChIP-seq
19
ATAC-seq
6
MeRIP-seq
2
Capture-C
1
DNase-seq
1
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
35
Transcription
25
DNA binding
20
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
16
histone
16
histone modification
10
narrow histone mark
9
control
6
broad histone mark
3
RNA binding protein
3
nucleotide modification
3
transcription factor
Date released
26
February, 2021
22
May, 2021
16
November, 2019
6
November, 2020
5
March, 2020
4
December, 2017
4
June, 2019
3
May, 2019
2
August, 2021
1
July, 2018
1
July, 2019
Available data
62
bam
57
bigWig
36
tsv
21
bed narrowPeak
5
bigBed narrowPeak
5
fastq
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bedpe bed3+
1
bigBed bedMethyl
1
bigBed broadPeak
1
hic
Organism
90
Homo sapiens
Biosample type
76
cell line
9
primary cell
5
in vitro differentiated cells
Organ
91
epithelium
84
bone element
81
pancreas
23
kidney
19
connective tissue
9
musculature of body
6
embryo
6
heart
3
brain
1
adipose tissue
1
limb
liver
1
stomach
1
urinary bladder
1
vasculature
Project
86
AMP
4
T1D
Genome assembly (visualization)
60
hg19
56
GRCh38
Lab
84
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
90
inconsistent ontology term
5
audit script error
Audit category:
1
inconsistent control read length
organ_slims!
liver
BIOSAMPLE
ASSAY
90 results
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total RNA-seq
ChIP-seq
ATAC-seq
MeRIP-seq
Capture-C
DNase-seq
Hi-C
RRBS
single cell RNA-seq
cell line
EndoC_BH1
33
15
19
6
2
1
primary cell
epithelial cell of proximal tubule
3
1
1
kidney epithelial cell
3
pancreatic acinar cell
1
in vitro differentiated cells
Hepatic endoderm
4
intermediate endothelial cell
1
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