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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ATAC-seq
22
ChIP-seq
12
DNase-seq
Assay category
34
DNA accessibility
22
DNA binding
Target of assay
17
histone
17
histone modification
9
broad histone mark
8
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
15
June, 2019
14
December, 2017
14
September, 2018
5
September, 2017
4
May, 2019
3
August, 2017
1
October, 2019
Available data
287
bam
274
bigWig
251
fastq
155
tsv
131
bed narrowPeak
80
zippedFastqFolder
56
bigBed narrowPeak
14
bed bed3+
11
bed broadPeak
11
bigBed broadPeak
7
tagAlign
5
bed bedMethyl
5
bigBed bedMethyl
4
bedpe bed3+
4
hic
3
cool
Organism
56
Homo sapiens
Biosample type
41
primary cell
14
in vitro differentiated cells
1
cell line
Organ
358
liver
127
brain
104
kidney
94
heart
91
pancreas
84
limb
vasculature
79
blood vessel
76
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
56
AMP
Genome assembly (visualization)
56
GRCh38
51
hg19
Lab
56
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
organ_slims!
vasculature
BIOSAMPLE
ASSAY
56 results
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ATAC-seq
ChIP-seq
DNase-seq
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
kidney epithelial cell
4
1
pancreatic acinar cell
5
pancreatic ductal cell
4
+ See 8 more…
in vitro differentiated cells
hepatocyte
14
cell line
glomerular visceral epithelial cell
1
See all biosamples
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