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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
399
total RNA-seq
72
ChIP-seq
18
ATAC-seq
6
WGBS
2
RNA microarray
2
small RNA-seq
1
pCHi-C
Assay category
401
Transcription
72
DNA binding
18
DNA accessibility
6
DNA methylation
Target of assay
31
histone
31
histone modification
24
control
20
broad histone mark
17
transcription factor
11
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
56
August, 2017
23
October, 2018
15
February, 2023
10
July, 2019
2
February, 2020
1
August, 2021
1
December, 2019
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
440
bam
423
bigWig
402
tsv
43
fastq
25
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
499
Homo sapiens
Biosample type
500
tissue
386
primary cell
79
cell line
25
in vitro differentiated cells
Organ
544
connective tissue
485
adipose tissue
485
pancreas
358
liver
286
heart
231
kidney
229
brain
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
41
nerve
37
musculature of body
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
500
AMP
Genome assembly (visualization)
433
hg19
420
GRCh38
Lab
500
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
500 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
RNA microarray
small RNA-seq
pCHi-C
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
pigmented layer of retina
2
12
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