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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
DNase-seq
7
ChIP-seq
2
Hi-C
Assay category
18
DNA accessibility
7
DNA binding
2
3D chromatin structure
Target of assay
4
transcription factor
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
15
June, 2019
4
August, 2017
3
August, 2021
2
July, 2019
2
October, 2019
1
November, 2018
Available data
759
bam
726
bigWig
557
tsv
301
fastq
164
bed narrowPeak
86
bigBed narrowPeak
80
zippedFastqFolder
27
bed bed3+
25
bed broadPeak
24
bigBed broadPeak
15
tagAlign
8
bed bedMethyl
8
bigBed bedMethyl
6
bedpe bed3+
6
hic
3
cool
2
hdf5
1
tar
Organism
27
Homo sapiens
Biosample type
21
primary cell
6
tissue
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
27
connective tissue
21
epithelium
18
ureter
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
27
AMP
Genome assembly (visualization)
25
GRCh38
21
hg19
Lab
27
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
27 results
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DNase-seq
ChIP-seq
Hi-C
primary cell
hepatocyte
1
3
brain microvascular endothelial cell
1
1
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 9 more…
tissue
white adipose tissue
4
omental fat pad
2
See all biosamples
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