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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
529
total RNA-seq
183
ChIP-seq
109
ATAC-seq
70
single cell RNA-seq
53
WGBS
21
DNase-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
3
small RNA-seq
2
Capture-C
2
RNA microarray
2
pCHi-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
Assay category
21
DNA accessibility
Date released
15
June, 2019
5
October, 2019
1
November, 2018
Available data
19
bam
19
bed narrowPeak
19
bigBed narrowPeak
19
bigWig
18
bed bed3+
18
bed broadPeak
18
bigBed broadPeak
1
fastq
Organism
21
Homo sapiens
Biosample type
18
primary cell
2
tissue
1
cell line
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
21
AMP
Genome assembly (visualization)
19
GRCh38
13
hg19
Lab
21
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
December, 2017
BIOSAMPLE
ASSAY
21 results
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DNase-seq
primary cell
kidney tubule cell
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
brain microvascular endothelial cell
1
+ See 8 more…
tissue
omental fat pad
2
cell line
glomerular visceral epithelial cell
1
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