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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
total RNA-seq
27
ATAC-seq
21
ChIP-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
Assay category
86
Transcription
28
DNA accessibility
21
DNA binding
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
7
control
6
broad histone mark
6
narrow histone mark
5
transcription factor
3
nucleotide modification
1
RNA binding protein
Date released
92
February, 2021
21
May, 2021
16
November, 2019
6
November, 2020
5
March, 2020
2
August, 2021
2
October, 2019
1
February, 2023
Available data
117
bam
106
bigWig
87
tsv
27
bed narrowPeak
6
tagAlign
1
bedpe bed3+
1
bigBed narrowPeak
1
hic
Organism
144
Homo sapiens
Biosample type
407
primary cell
145
cell line
88
tissue
24
in vitro differentiated cells
Organ
401
liver
92
pancreas
79
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
141
AMP
4
T1D
Genome assembly (visualization)
116
hg19
113
GRCh38
Lab
139
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
76
inconsistent ontology term
BIOSAMPLE
ASSAY
145 results
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total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
Hi-C
cell line
EndoC_BH1
33
19
15
6
2
1
1
smooth muscle cell of the coronary artery
52
8
6
glomerular visceral epithelial cell
1
1
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