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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
DNase-seq
6
ChIP-seq
Assay category
20
DNA accessibility
6
DNA binding
Target of assay
4
histone
4
histone modification
2
RNA binding protein
2
broad histone mark
2
narrow histone mark
2
transcription factor
Date released
16
June, 2019
6
October, 2019
4
November, 2017
Available data
418
bam
385
bigWig
257
fastq
225
bed narrowPeak
213
tsv
101
bigBed narrowPeak
80
zippedFastqFolder
26
bed broadPeak
26
bigBed broadPeak
25
bed bed3+
13
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
26
Homo sapiens
Biosample type
22
primary cell
4
tissue
Organ
78
kidney
63
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
26
AMP
Genome assembly (visualization)
24
GRCh38
20
hg19
Lab
26
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
26 results
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DNase-seq
ChIP-seq
primary cell
endothelial cell of umbilical vein
2
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 8 more…
tissue
coronary artery
2
tibial artery
2
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