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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
208
ChIP-seq
191
total RNA-seq
149
ATAC-seq
76
single cell RNA-seq
49
WGBS
24
DNase-seq
9
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
1
pCHi-C
Assay category
191
Transcription
Date released
78
February, 2021
39
February, 2023
26
September, 2018
16
September, 2020
9
July, 2019
6
May, 2021
5
December, 2019
3
February, 2020
3
March, 2020
3
October, 2019
2
October, 2018
1
November, 2019
Available data
138
tsv
133
bam
133
bigWig
81
fastq
Organism
191
Homo sapiens
Biosample type
94
primary cell
86
cell line
9
tissue
2
in vitro differentiated cells
Organ
474
connective tissue
403
pancreas
398
adipose tissue
189
liver
131
epithelium
72
heart
62
bone element
61
blood vessel
61
vasculature
60
kidney
56
artery
19
eye
17
brain
14
embryo
7
limb
6
musculature of body
5
nerve
4
skeleton
1
pericardium
1
spinal cord
Project
136
AMP
53
HPAP
2
T1D
Genome assembly (visualization)
133
GRCh38
133
hg19
Lab
138
AMP-T2D consortium
53
Klaus Kaestner, Upenn
Audit category:
34
inconsistent ontology term
BIOSAMPLE
ASSAY
191 results
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total RNA-seq
primary cell
pancreatic alpha cell
52
pancreatic beta cell
21
hepatocyte
5
pancreatic acinar cell
4
pancreatic ductal cell
4
+ See 8 more…
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
glomerular visceral epithelial cell
1
tissue
ascending aorta
2
pigmented layer of retina
2
thoracic aorta
2
aorta
1
coronary artery
1
+ See 1 more…
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
See all biosamples
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