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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
RNA microarray
83
ATAC-seq
total RNA-seq
47
WGBS
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
85
DNA accessibility
53
DNA methylation
8
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
90
February, 2021
80
May, 2022
17
February, 2023
17
May, 2021
8
July, 2019
7
August, 2020
6
November, 2020
3
March, 2020
3
October, 2019
3
October, 2022
3
September, 2020
2
August, 2021
1
December, 2019
1
November, 2019
Available data
bam
225
bigWig
176
fastq
159
bed narrowPeak
84
txt
80
zippedFastqFolder
78
tsv
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
4
bed bed3
3
cool
2
hdf5
1
tar
Organism
240
Homo sapiens
Biosample type
112
primary cell
101
tissue
28
cell line
Organ
190
pancreas
179
heart
161
kidney
152
epithelium
89
bone element
84
connective tissue
80
liver
48
vasculature
47
blood vessel
46
adipose tissue
37
artery
37
musculature of body
35
eye
31
brain
20
lung
9
blood
9
bodily fluid
5
gonad
5
limb
5
ovary
4
skeleton
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
141
AMP
99
HPAP
1
T1D
Genome assembly (visualization)
32
hg19
10
GRCh38
Lab
135
AMP-T2D consortium
99
Klaus Kaestner, Upenn
6
Rohit N. Kulkarni, M.D., Ph.D.
1
Kyle Gaulton, UCSD
Audit category:
112
inconsistent ontology term
5
audit script error
assay_title!
total RNA-seq
files.file_type!
bam
BIOSAMPLE
ASSAY
241 results
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Clear Filters
RNA microarray
ATAC-seq
WGBS
Hi-C
MeRIP-seq
RRBS
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
primary cell
pancreatic alpha cell
29
31
1
pancreatic beta cell
16
16
1
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
+ See 10 more…
tissue
bone element
84
pigmented layer of retina
12
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 2 more…
cell line
EndoC_BH1
18
1
6
2
1
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