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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
ChIP-seq
103
total RNA-seq
74
ATAC-seq
74
single cell RNA-seq
47
WGBS
24
DNase-seq
8
Hi-C
7
RRBS
2
pCHi-C
1
FAIRE-seq
1
small RNA-seq
Assay category
178
Transcription
104
DNA binding
99
DNA accessibility
54
DNA methylation
8
3D chromatin structure
Target of assay
74
histone
74
histone modification
39
narrow histone mark
35
broad histone mark
24
control
6
RNA binding protein
6
transcription factor
Date released
80
May, 2022
61
September, 2018
37
February, 2023
37
June, 2019
35
April, 2018
35
July, 2018
33
October, 2019
29
August, 2017
21
July, 2019
19
September, 2020
9
February, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
1
March, 2020
1
May, 2021
Available data
278
bam
263
bigWig
241
fastq
131
tsv
123
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
29
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
tagAlign
3
cool
3
hdf5
1
bed bed3
1
tar
Organism
445
Homo sapiens
Biosample type
562
tissue
445
primary cell
121
in vitro differentiated cells
79
cell line
1
stem cell
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
292
AMP
152
HPAP
1
T1D
Genome assembly (visualization)
261
hg19
257
GRCh38
Lab
292
AMP-T2D consortium
152
Klaus Kaestner, Upenn
1
Kyle Gaulton, UCSD
Audit category:
23
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
BIOSAMPLE
ASSAY
445 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
small RNA-seq
primary cell
pancreatic alpha cell
13
52
35
12
31
1
pancreatic beta cell
13
21
23
12
16
1
pancreatic acinar cell
8
4
9
12
1
pancreatic ductal cell
13
4
4
10
endothelial cell of umbilical vein
17
2
2
1
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