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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
DNase-seq
7
ChIP-seq
Assay category
25
DNA accessibility
7
DNA binding
Target of assay
5
histone
5
histone modification
3
narrow histone mark
2
RNA binding protein
2
broad histone mark
2
transcription factor
Date released
20
June, 2019
4
November, 2017
4
October, 2019
2
August, 2017
1
November, 2018
1
November, 2020
Available data
910
bam
871
bigWig
634
tsv
358
fastq
226
bed narrowPeak
104
bigBed narrowPeak
80
zippedFastqFolder
48
bed bed3+
32
bed broadPeak
31
bigBed broadPeak
29
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
6
bed bed3
6
bedpe bed3+
6
hic
4
bed bedgraph
3
cool
3
hdf5
1
tar
Organism
32
Homo sapiens
Biosample type
28
primary cell
3
tissue
1
in vitro differentiated cells
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
32
AMP
Genome assembly (visualization)
29
GRCh38
25
hg19
Lab
32
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
BIOSAMPLE
ASSAY
32 results
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DNase-seq
ChIP-seq
primary cell
endothelial cell of umbilical vein
2
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
glomerular visceral epithelial cell
2
+ See 12 more…
tissue
omental fat pad
2
subcutaneous abdominal adipose tissue
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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