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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
total RNA-seq
51
ATAC-seq
47
WGBS
6
MeRIP-seq
3
Hi-C
2
Capture-C
1
pCHi-C
Assay category
53
Transcription
51
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
80
May, 2022
37
February, 2023
19
September, 2020
7
August, 2020
6
February, 2021
6
November, 2020
4
August, 2021
3
October, 2022
1
May, 2021
Available data
80
zippedFastqFolder
69
fastq
12
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
2
bed bed3+
2
bed narrowPeak
Organism
163
Homo sapiens
Biosample type
153
primary cell
6
cell line
4
in vitro differentiated cells
Organ
221
pancreas
191
kidney
158
epithelium
71
liver
40
heart
19
lung
8
blood
8
bodily fluid
5
connective tissue
1
bone element
1
bone marrow
1
thymus
Project
152
HPAP
10
AMP
1
T1D
Genome assembly (visualization)
10
GRCh38
7
hg19
Lab
AMP-T2D consortium
152
Klaus Kaestner, Upenn
6
Rohit N. Kulkarni, M.D., Ph.D.
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
3
audit script error
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
163 results
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Clear Filters
total RNA-seq
ATAC-seq
WGBS
MeRIP-seq
Hi-C
Capture-C
pCHi-C
primary cell
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
pancreatic acinar cell
4
1
adult endothelial progenitor cell
1
cell line
EndoC_BH1
6
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
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