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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
5
DNase-seq
4
ATAC-seq
3
total RNA-seq
1
FAIRE-seq
1
Hi-C
Assay category
25
DNA binding
10
DNA accessibility
3
Transcription
1
3D chromatin structure
Target of assay
22
histone
22
histone modification
12
broad histone mark
10
narrow histone mark
3
control
Date released
487
February, 2021
154
August, 2017
80
May, 2022
66
February, 2023
61
September, 2018
39
October, 2019
38
June, 2019
35
April, 2018
35
July, 2018
31
July, 2019
28
May, 2021
25
October, 2018
19
December, 2017
19
September, 2020
17
November, 2019
12
November, 2020
11
August, 2021
8
March, 2020
7
August, 2020
6
December, 2019
6
November, 2017
5
May, 2019
5
September, 2017
4
August, 2018
3
October, 2022
2
February, 2020
1
January, 2018
1
June, 2018
1
May, 2023
1
November, 2018
1
October, 2017
Available data
32
bam
28
bigWig
21
bed narrowPeak
17
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
3
tsv
2
bed bed3+
1
hic
1
tar
Organism
39
Homo sapiens
Biosample type
33
primary cell
2
cell line
2
in vitro differentiated cells
2
tissue
Organ
86
brain
69
limb
47
blood vessel
47
vasculature
42
nerve
35
epithelium
30
kidney
26
artery
21
eye
21
vein
18
pancreas
8
heart
7
liver
4
connective tissue
4
gonad
4
ovary
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
39
AMP
Genome assembly (visualization)
30
hg19
23
GRCh38
Lab
39
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
Liver fetal (hepatocyte)
1
cell line
glomerular visceral epithelial cell
1
1
in vitro differentiated cells
adipocyte
2
tissue
adipose tissue
1
islet of Langerhans
1
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