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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
8
total RNA-seq
1
GRO-seq
Assay category
40
DNA binding
8
Transcription
Target of assay
25
histone
25
histone modification
14
narrow histone mark
11
broad histone mark
9
control
6
transcription factor
2
RNA binding protein
1
chromatin remodeller
Date released
28
December, 2017
13
February, 2018
7
May, 2021
1
January, 2018
Available data
48
bam
42
fastq
39
bigWig
30
bed narrowPeak
14
bigBed narrowPeak
8
tsv
3
bed bed3+
3
tagAlign
Organism
49
Homo sapiens
Biosample type
406
primary cell
87
cell line
49
in vitro differentiated cells
15
tissue
Organ
97
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
49
AMP
Genome assembly (visualization)
39
GRCh38
39
hg19
1
hg18
Lab
49
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
BIOSAMPLE
ASSAY
49 results
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ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
18
4
1
hepatocyte
15
Hepatic endoderm
4
pancreatic PP cell
3
endothelial cell
1
intermediate endothelial cell
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
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