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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
53
total RNA-seq
41
WGBS
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
129
DNA binding
DNA accessibility
53
Transcription
47
DNA methylation
8
3D chromatin structure
Target of assay
93
histone
93
histone modification
49
narrow histone mark
44
broad histone mark
30
control
9
transcription factor
8
RNA binding protein
3
nucleotide modification
1
chromatin remodeller
Date released
41
May, 2022
38
February, 2023
26
August, 2017
25
October, 2019
21
September, 2018
19
December, 2017
16
September, 2020
14
November, 2019
8
July, 2019
6
August, 2021
6
June, 2019
6
November, 2017
6
November, 2020
5
May, 2019
4
May, 2021
3
October, 2022
2
March, 2020
Available data
275
bam
249
bigWig
225
fastq
tsv
97
bed narrowPeak
41
zippedFastqFolder
36
bigBed narrowPeak
7
tagAlign
6
bed bedMethyl
6
bed broadPeak
6
bigBed bedMethyl
6
bigBed broadPeak
6
hic
5
bed bed3+
5
bedpe bed3+
3
cool
2
hdf5
Organism
245
Homo sapiens
Biosample type
199
primary cell
25
cell line
22
in vitro differentiated cells
Organ
588
liver
358
pancreas
246
epithelium
223
brain
172
connective tissue
167
kidney
148
heart
110
vasculature
106
blood vessel
89
bone element
82
adipose tissue
71
limb
60
blood
60
bodily fluid
52
musculature of body
35
nerve
34
artery
24
eye
23
embryo
22
spleen
19
vein
9
lung
4
gonad
4
ovary
4
skeleton
1
bone marrow
1
lymph node
1
pericardium
1
pituitary gland
1
thymus
0
esophagus
Project
147
AMP
97
HPAP
2
T1D
Genome assembly (visualization)
115
hg19
97
GRCh38
Lab
143
AMP-T2D consortium
97
Klaus Kaestner, Upenn
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
35
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
assay_slims!
DNA accessibility
files.file_type!
tsv
BIOSAMPLE
ASSAY
246 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
Hi-C
MeRIP-seq
RRBS
Capture-C
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
13
42
25
1
pancreatic beta cell
13
11
16
1
endothelial cell of umbilical vein
17
2
pancreatic ductal cell
13
epithelial cell of proximal tubule
10
1
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cell line
EndoC_BH1
15
1
6
2
1
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
pancreatic PP cell
3
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