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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
162
single cell RNA-seq
149
total RNA-seq
6
WGBS
3
pCHi-C
1
ATAC-seq
1
RNA microarray
1
small RNA-seq
Assay category
312
Transcription
6
DNA methylation
1
DNA accessibility
Date released
92
August, 2021
84
February, 2021
33
April, 2018
33
July, 2018
26
September, 2018
15
July, 2019
9
May, 2021
8
March, 2020
6
December, 2019
5
October, 2019
3
August, 2018
3
February, 2020
2
February, 2023
2
October, 2018
1
June, 2018
1
November, 2019
Available data
527
bam
484
bigWig
323
tsv
302
bed narrowPeak
257
fastq
170
bigBed narrowPeak
80
zippedFastqFolder
52
bed broadPeak
52
bigBed broadPeak
51
bed bed3+
14
bed bedMethyl
14
bigBed bedMethyl
13
tagAlign
9
hic
8
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
323
Homo sapiens
Biosample type
119
primary cell
114
tissue
87
cell line
3
in vitro differentiated cells
Organ
478
connective tissue
417
pancreas
401
adipose tissue
174
liver
168
heart
156
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
315
AMP
6
HPAP
2
T1D
Genome assembly (visualization)
216
hg19
215
GRCh38
Lab
317
AMP-T2D consortium
6
Klaus Kaestner, Upenn
Audit category:
36
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
323 results
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single cell RNA-seq
total RNA-seq
WGBS
pCHi-C
ATAC-seq
RNA microarray
small RNA-seq
primary cell
pancreatic alpha cell
12
10
6
pancreatic beta cell
12
10
pancreatic acinar cell
12
4
pancreatic ductal cell
10
4
pancreatic delta cell
11
+ See 14 more…
tissue
heart left ventricle
18
3
1
heart right ventricle
17
1
1
right cardiac atrium
18
1
left cardiac atrium
18
heart
4
1
+ See 12 more…
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
cardiac fibroblast
1
endothelial cell
1
intermediate endothelial cell
1
See all biosamples
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