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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ChIP-seq
76
total RNA-seq
70
single cell RNA-seq
54
ATAC-seq
19
DNase-seq
6
MeRIP-seq
6
RRBS
5
Hi-C
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
76
Transcription
Date released
26
February, 2021
26
September, 2018
6
May, 2021
5
December, 2019
5
July, 2019
3
October, 2019
2
February, 2023
2
October, 2018
1
November, 2019
Available data
76
tsv
74
bam
74
bigWig
28
fastq
Organism
76
Homo sapiens
Biosample type
40
primary cell
32
cell line
2
in vitro differentiated cells
2
tissue
Organ
474
connective tissue
398
adipose tissue
335
pancreas
189
liver
76
epithelium
72
heart
62
bone element
61
blood vessel
61
vasculature
60
kidney
56
artery
19
eye
17
brain
14
embryo
7
limb
6
musculature of body
5
nerve
4
skeleton
1
pericardium
1
spinal cord
0
lymph node
Project
76
AMP
53
HPAP
2
T1D
Genome assembly (visualization)
74
GRCh38
74
hg19
Lab
76
AMP-T2D consortium
Audit category:
32
inconsistent ontology term
BIOSAMPLE
ASSAY
76 results
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total RNA-seq
primary cell
pancreatic alpha cell
10
pancreatic beta cell
10
hepatocyte
5
pancreatic acinar cell
4
pancreatic ductal cell
4
+ See 7 more…
cell line
EndoC_BH1
31
glomerular visceral epithelial cell
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
tissue
pigmented layer of retina
2
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