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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
ChIP-seq
Assay category
206
Transcription
164
DNA binding
126
DNA accessibility
53
DNA methylation
8
3D chromatin structure
Target of assay
117
histone
117
histone modification
60
broad histone mark
57
narrow histone mark
38
control
9
transcription factor
8
RNA binding protein
1
chromatin remodeller
Date released
59
October, 2019
26
August, 2017
21
September, 2018
19
December, 2017
13
November, 2019
6
June, 2019
6
November, 2017
5
May, 2019
4
August, 2021
4
May, 2021
1
March, 2020
Available data
164
bam
125
bigWig
121
bed narrowPeak
72
fastq
60
bigBed narrowPeak
7
tagAlign
6
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
Organism
164
Homo sapiens
Biosample type
92
primary cell
35
tissue
22
in vitro differentiated cells
15
cell line
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
134
heart
129
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
162
AMP
2
T1D
Genome assembly (visualization)
125
hg19
121
GRCh38
Lab
164
AMP-T2D consortium
Audit category:
25
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
BIOSAMPLE
ASSAY
164 results
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Clear Filters
ChIP-seq
primary cell
endothelial cell of umbilical vein
17
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic ductal cell
13
epithelial cell of proximal tubule
10
+ See 6 more…
tissue
tibial nerve
35
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
pancreatic PP cell
3
cell line
EndoC_BH1
15
See all biosamples
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