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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
ChIP-seq
136
total RNA-seq
104
ATAC-seq
70
single cell RNA-seq
47
WGBS
21
DNase-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
136
Transcription
Date released
39
February, 2023
26
February, 2021
26
September, 2018
16
September, 2020
7
October, 2019
6
May, 2021
5
December, 2019
5
July, 2019
2
March, 2020
2
October, 2018
1
February, 2020
1
November, 2019
Available data
83
tsv
81
fastq
80
bam
80
bigWig
Organism
136
Homo sapiens
Biosample type
93
primary cell
34
cell line
7
tissue
2
in vitro differentiated cells
Organ
474
connective tissue
398
adipose tissue
397
pancreas
189
liver
131
epithelium
72
heart
62
bone element
61
blood vessel
61
vasculature
60
kidney
56
artery
19
eye
17
brain
14
embryo
7
limb
6
musculature of body
5
nerve
4
skeleton
1
pericardium
1
spinal cord
Project
81
AMP
53
HPAP
2
T1D
Genome assembly (visualization)
80
GRCh38
80
hg19
Lab
83
AMP-T2D consortium
53
Klaus Kaestner, Upenn
Audit category:
34
inconsistent ontology term
BIOSAMPLE
ASSAY
136 results
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total RNA-seq
primary cell
pancreatic alpha cell
52
pancreatic beta cell
21
hepatocyte
5
pancreatic acinar cell
4
pancreatic ductal cell
4
+ See 7 more…
cell line
EndoC_BH1
33
glomerular visceral epithelial cell
1
tissue
tibial nerve
5
pigmented layer of retina
2
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
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