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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ChIP-seq
7
DNase-seq
7
total RNA-seq
2
ATAC-seq
1
FAIRE-seq
1
Hi-C
Assay category
45
DNA binding
10
DNA accessibility
7
Transcription
1
3D chromatin structure
Target of assay
45
histone
45
histone modification
28
broad histone mark
17
narrow histone mark
control
Date released
80
May, 2022
63
October, 2019
61
September, 2018
52
February, 2023
33
April, 2018
33
July, 2018
32
February, 2021
25
May, 2021
19
September, 2020
18
June, 2019
17
August, 2017
16
December, 2017
14
November, 2019
13
July, 2019
7
August, 2020
6
December, 2019
6
March, 2020
5
August, 2021
5
September, 2017
4
May, 2019
4
November, 2017
3
August, 2018
3
November, 2020
3
October, 2022
2
October, 2018
1
February, 2020
1
June, 2018
Available data
60
bam
56
bigWig
48
bed narrowPeak
40
bigBed narrowPeak
7
tsv
6
bed broadPeak
6
bigBed broadPeak
4
bed bed3+
1
hic
1
tar
Organism
63
Homo sapiens
Biosample type
31
tissue
30
primary cell
2
cell line
Organ
79
brain
53
limb
40
blood vessel
40
vasculature
32
epithelium
31
nerve
24
kidney
21
artery
21
eye
19
vein
12
pancreas
8
heart
7
liver
4
connective tissue
4
gonad
4
ovary
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
63
AMP
Genome assembly (visualization)
58
hg19
54
GRCh38
Lab
63
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
target.investigated_as!
control
BIOSAMPLE
ASSAY
63 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
FAIRE-seq
Hi-C
tissue
tibial nerve
24
2
4
1
primary cell
endothelial cell of umbilical vein
15
2
1
1
epithelial cell of proximal tubule
6
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
Liver fetal (hepatocyte)
1
cell line
glomerular visceral epithelial cell
1
1
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