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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
ChIP-seq
43
total RNA-seq
32
ATAC-seq
6
MeRIP-seq
3
DNase-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
RNA microarray
Assay category
72
DNA binding
43
Transcription
35
DNA accessibility
1
3D chromatin structure
Target of assay
51
histone
51
histone modification
29
broad histone mark
22
narrow histone mark
20
control
4
transcription factor
3
RNA binding protein
3
nucleotide modification
1
chromatin remodeller
Date released
44
October, 2019
26
February, 2021
26
May, 2021
19
December, 2017
16
November, 2019
15
February, 2023
6
November, 2020
5
March, 2020
2
August, 2021
1
December, 2019
1
February, 2020
Available data
117
bam
101
bigWig
72
bed narrowPeak
45
tsv
41
bigBed narrowPeak
19
fastq
3
tagAlign
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
1
hic
Organism
160
Homo sapiens
Biosample type
primary cell
79
cell line
58
tissue
24
in vitro differentiated cells
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
157
AMP
4
T1D
Genome assembly (visualization)
115
hg19
100
GRCh38
Lab
155
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
81
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent control read length
organ_slims!
lung
biosample_type!
primary cell
BIOSAMPLE
ASSAY
161 results
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ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
DNase-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
Hi-C
RNA microarray
cell line
EndoC_BH1
15
33
19
6
2
1
1
glomerular visceral epithelial cell
1
1
tissue
tibial nerve
35
5
1
2
pigmented layer of retina
2
12
renal glomerulus
1
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
pancreatic PP cell
3
endothelial cell
1
intermediate endothelial cell
1
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