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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
13
ATAC-seq
2
WGBS
2
total RNA-seq
1
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
20
DNA binding
14
DNA accessibility
2
DNA methylation
2
Transcription
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
14
February, 2023
9
November, 2018
7
December, 2018
7
January, 2019
1
December, 2019
1
March, 2020
1
October, 2017
Available data
26
bed narrowPeak
24
bam
24
fastq
16
bigWig
13
bigBed narrowPeak
4
tsv
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
40
Homo sapiens
Biosample type
406
primary cell
79
cell line
40
tissue
24
in vitro differentiated cells
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
40
AMP
Genome assembly (visualization)
26
hg19
16
GRCh38
Lab
40
AMP-T2D consortium
Audit category:
1
audit script error
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
ATAC-seq
WGBS
total RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
spleen
20
1
2
1
1
pigmented layer of retina
12
2
renal glomerulus
1
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