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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
total RNA-seq
19
ATAC-seq
14
ChIP-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
Assay category
34
Transcription
20
DNA accessibility
14
DNA binding
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
5
control
3
nucleotide modification
RNA binding protein
1
transcription factor
Date released
26
February, 2021
21
May, 2021
15
November, 2019
6
November, 2020
5
March, 2020
2
August, 2021
2
October, 2019
1
February, 2023
Available data
50
bam
49
bigWig
35
tsv
14
bed narrowPeak
1
bedpe bed3+
1
bigBed narrowPeak
1
hic
Organism
77
Homo sapiens
Biosample type
401
primary cell
78
cell line
22
in vitro differentiated cells
15
tissue
Organ
347
liver
91
pancreas
78
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
51
blood
51
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
74
AMP
4
T1D
Genome assembly (visualization)
51
hg19
48
GRCh38
Lab
72
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
75
inconsistent ontology term
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
78 results
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total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
Hi-C
cell line
EndoC_BH1
33
19
14
6
2
1
1
glomerular visceral epithelial cell
1
1
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