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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
534
ChIP-seq
160
total RNA-seq
6
DNase-seq
5
WGBS
4
pCHi-C
3
ATAC-seq
3
Hi-C
3
small RNA-seq
2
RRBS
single cell RNA-seq
Assay category
534
DNA binding
163
Transcription
9
DNA accessibility
7
DNA methylation
3
3D chromatin structure
Target of assay
327
transcription factor
104
control
100
histone modification
99
histone
82
recombinant protein
58
narrow histone mark
57
RNA binding protein
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
53
November, 2018
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
4
March, 2020
2
February, 2021
2
June, 2019
1
December, 2018
1
February, 2020
Available data
681
bam
588
bigWig
465
fastq
407
bed narrowPeak
358
bigBed narrowPeak
166
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
hdf5
1
hic
Organism
720
Homo sapiens
Biosample type
370
cell line
321
tissue
15
in vitro differentiated cells
14
primary cell
Organ
719
liver
675
connective tissue
651
pancreas
491
adipose tissue
296
epithelium
283
brain
260
heart
230
vasculature
224
blood vessel
158
bone element
157
kidney
139
artery
122
limb
95
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
720
AMP
Genome assembly (visualization)
590
hg19
531
GRCh38
Lab
720
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
720 results
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ChIP-seq
total RNA-seq
DNase-seq
WGBS
pCHi-C
ATAC-seq
Hi-C
small RNA-seq
RRBS
cell line
HepG2
360
5
1
2
1
1
tissue
liver
145
147
2
3
1
1
1
1
right lobe of liver
10
3
2
1
1
2
esophagus
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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