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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
total RNA-seq
155
ChIP-seq
21
ATAC-seq
4
DNase-seq
4
WGBS
3
small RNA-seq
1
RRBS
1
single cell RNA-seq
Assay category
173
Transcription
155
DNA binding
25
DNA accessibility
5
DNA methylation
Target of assay
70
histone modification
69
histone
46
control
44
narrow histone mark
39
transcription factor
25
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
54
August, 2017
48
December, 2017
40
May, 2022
8
July, 2019
7
November, 2018
6
October, 2019
March, 2020
1
February, 2020
1
February, 2021
Available data
287
bam
264
bigWig
152
tsv
113
bed narrowPeak
83
fastq
70
tagAlign
49
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
Organism
358
Homo sapiens
Biosample type
401
cell line
358
tissue
15
in vitro differentiated cells
14
primary cell
Organ
546
connective tissue
496
pancreas
487
adipose tissue
358
liver
306
heart
299
kidney
263
brain
158
bone element
130
blood vessel
130
vasculature
122
limb
77
musculature of body
73
artery
56
eye
43
nerve
24
spleen
19
lung
18
ureter
16
skeleton
15
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
1
thymus
0
esophagus
Project
358
AMP
Genome assembly (visualization)
266
hg19
237
GRCh38
Lab
318
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
month_released!
March, 2020
BIOSAMPLE
ASSAY
358 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
RRBS
single cell RNA-seq
tissue
liver
166
145
20
2
3
1
1
1
right lobe of liver
3
10
1
2
1
2
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