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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
total RNA-seq
5
ChIP-seq
2
STARR-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
9
Transcription
5
DNA binding
1
3D chromatin structure
1
DNA sequencing
Target of assay
5
control
Date released
47
November, 2017
36
August, 2017
24
May, 2020
20
May, 2022
18
August, 2021
13
December, 2017
3
February, 2021
3
March, 2020
2
July, 2019
1
December, 2018
1
February, 2020
1
November, 2018
1
October, 2019
Available data
17
bed narrowPeak
bigWig
9
tsv
4
bam
4
tagAlign
3
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
18
Homo sapiens
Biosample type
17
cell line
1
primary cell
Organ
130
kidney
92
heart
18
liver
6
blood vessel
6
vasculature
4
pancreas
3
connective tissue
3
epithelium
2
artery
1
adipose tissue
0
esophagus
Project
18
AMP
Genome assembly (visualization)
1
hg19
Lab
17
Bing Ren, UCSD
1
AMP-T2D consortium
files.file_type!
bigWig
BIOSAMPLE
ASSAY
18 results
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total RNA-seq
ChIP-seq
STARR-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
9
4
2
1
1
primary cell
hepatocyte
1
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