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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
417
total RNA-seq
78
ChIP-seq
6
WGBS
6
pCHi-C
3
small RNA-seq
1
RNA microarray
1
RRBS
Assay category
420
Transcription
78
DNA binding
DNA accessibility
7
DNA methylation
Target of assay
35
histone
35
histone modification
25
control
20
broad histone mark
18
transcription factor
15
narrow histone mark
6
RNA binding protein
Date released
386
February, 2021
56
August, 2017
23
October, 2018
20
October, 2019
13
July, 2019
4
February, 2023
3
February, 2020
3
June, 2019
1
August, 2018
1
August, 2021
1
March, 2020
1
May, 2023
Available data
440
bam
421
bigWig
406
tsv
41
fastq
9
bed narrowPeak
8
bigBed narrowPeak
8
tagAlign
4
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
Organism
511
Homo sapiens
Biosample type
505
tissue
6
primary cell
1
in vitro differentiated cells
Organ
773
pancreas
762
liver
650
connective tissue
483
adipose tissue
401
epithelium
276
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
512
AMP
Genome assembly (visualization)
421
GRCh38
421
hg19
Lab
512
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
512 results
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total RNA-seq
ChIP-seq
WGBS
pCHi-C
small RNA-seq
RNA microarray
RRBS
tissue
adipose tissue
382
2
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
islet of Langerhans
14
2
4
omental fat pad
5
11
1
+ See 4 more…
primary cell
retinal pigment epithelial cell
3
1
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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