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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
223
ChIP-seq
36
DNase-seq
36
total RNA-seq
ATAC-seq
6
pCHi-C
4
small RNA-seq
3
Hi-C
3
RRBS
3
single cell RNA-seq
1
FAIRE-seq
Assay category
223
DNA binding
43
Transcription
37
DNA accessibility
3
3D chromatin structure
3
DNA methylation
Target of assay
190
histone
190
histone modification
120
narrow histone mark
70
broad histone mark
32
control
4
RNA binding protein
4
transcription factor
Date released
105
October, 2019
91
November, 2017
37
June, 2019
28
May, 2019
18
July, 2019
15
October, 2017
13
February, 2020
4
February, 2023
2
March, 2020
2
November, 2018
Available data
248
bam
226
bigWig
209
bed narrowPeak
133
bigBed narrowPeak
118
tagAlign
51
bed broadPeak
42
bigBed broadPeak
39
bed bed3+
31
tsv
20
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
tagAlign bed3+
Organism
315
Homo sapiens
Biosample type
289
tissue
26
primary cell
Organ
794
pancreas
768
liver
659
connective tissue
485
adipose tissue
421
epithelium
306
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
315
AMP
Genome assembly (visualization)
221
GRCh38
170
hg19
Lab
315
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
315 results
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ChIP-seq
DNase-seq
total RNA-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
FAIRE-seq
tissue
brain
20
14
1
1
layer of hippocampus
23
islet of Langerhans
2
14
4
caudate nucleus
15
1
1
substantia nigra
16
1
+ See 78 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
retinal pigment epithelial cell
3
1
1
brain pericyte
1
1
+ See 3 more…
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