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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
19
total RNA-seq
5
ChIP-seq
5
pCHi-C
4
DNase-seq
1
RRBS
Assay category
19
Transcription
5
DNA binding
4
DNA accessibility
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
20
October, 2019
7
June, 2019
4
February, 2023
1
February, 2020
1
July, 2019
1
March, 2020
Available data
7
bam
6
bed narrowPeak
6
bigBed narrowPeak
6
bigWig
6
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
34
Homo sapiens
Biosample type
29
tissue
5
primary cell
Organ
794
pancreas
768
liver
659
connective tissue
485
adipose tissue
421
epithelium
306
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
34
AMP
Genome assembly (visualization)
7
hg19
6
GRCh38
Lab
34
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
34 results
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Clear Filters
total RNA-seq
ChIP-seq
pCHi-C
DNase-seq
RRBS
tissue
islet of Langerhans
14
2
4
retina
3
3
pigmented layer of retina
2
bladder (urinary bladder)
1
primary cell
retinal pigment epithelial cell
3
1
1
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