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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
37
DNase-seq
29
ATAC-seq
25
total RNA-seq
6
Hi-C
6
RRBS
5
pCHi-C
2
small RNA-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
67
DNA accessibility
28
Transcription
7
DNA methylation
6
3D chromatin structure
Date released
37
June, 2019
31
February, 2023
19
October, 2019
11
July, 2019
5
March, 2020
4
August, 2017
3
February, 2020
2
May, 2022
1
January, 2018
Available data
64
bed narrowPeak
45
bigWig
44
bam
38
bed bed3+
37
bed broadPeak
37
bigBed broadPeak
37
bigBed narrowPeak
14
tsv
5
bed bedMethyl
5
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
113
Homo sapiens
Biosample type
107
tissue
6
primary cell
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
113
AMP
Genome assembly (visualization)
78
hg19
44
GRCh38
Lab
113
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
113 results
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DNase-seq
ATAC-seq
total RNA-seq
Hi-C
RRBS
pCHi-C
small RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
retina
3
15
3
islet of Langerhans
1
14
4
muscle of arm
17
muscle of leg
13
1
pigmented layer of retina
12
2
+ See 6 more…
primary cell
retinal pigment epithelial cell
1
1
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
1
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