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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
77
total RNA-seq
28
ATAC-seq
5
ChIP-seq
5
pCHi-C
4
DNase-seq
RRBS
Assay category
77
Transcription
32
DNA accessibility
5
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
142
February, 2021
31
February, 2023
21
October, 2019
7
June, 2019
1
February, 2020
1
May, 2021
Available data
84
txt
65
bam
64
bigWig
63
tsv
33
bed narrowPeak
6
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
203
Homo sapiens
Biosample type
198
tissue
5
primary cell
Organ
944
pancreas
789
liver
683
connective tissue
518
epithelium
491
adipose tissue
391
heart
350
kidney
284
brain
235
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
91
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
202
AMP
1
T1D
Genome assembly (visualization)
91
hg19
64
GRCh38
Lab
202
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
assay_title!
RRBS
organ_slims!
skeleton
BIOSAMPLE
ASSAY
203 results
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Clear Filters
RNA microarray
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
DNase-seq
tissue
bone element
84
bone tissue
58
islet of Langerhans
14
1
2
4
retina
3
15
3
pigmented layer of retina
2
12
primary cell
retinal pigment epithelial cell
3
1
megakaryocyte
1
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