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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
29
ATAC-seq
total RNA-seq
6
DNase-seq
4
pCHi-C
1
RRBS
Assay category
40
DNA binding
35
DNA accessibility
1
DNA methylation
Target of assay
27
histone
27
histone modification
16
broad histone mark
12
control
11
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
45
October, 2019
27
February, 2023
7
June, 2019
1
July, 2019
Available data
60
bed narrowPeak
45
bam
33
bigWig
32
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
80
Homo sapiens
Biosample type
75
tissue
5
primary cell
Organ
602
liver
543
pancreas
393
epithelium
294
kidney
281
heart
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
80
AMP
Genome assembly (visualization)
61
hg19
33
GRCh38
Lab
80
AMP-T2D consortium
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
80 results
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ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
RRBS
tissue
tibial nerve
35
1
2
retina
15
3
pigmented layer of retina
12
islet of Langerhans
2
1
4
primary cell
retinal pigment epithelial cell
3
1
1
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