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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ATAC-seq
17
ChIP-seq
14
total RNA-seq
4
DNase-seq
1
RRBS
Assay category
31
DNA accessibility
17
DNA binding
14
Transcription
1
DNA methylation
Target of assay
12
histone
12
histone modification
8
narrow histone mark
4
broad histone mark
4
transcription factor
1
RNA binding protein
1
control
Date released
27
February, 2023
10
February, 2018
9
December, 2017
8
August, 2021
6
June, 2019
2
May, 2021
1
July, 2019
Available data
47
bed narrowPeak
35
bam
34
bigWig
19
fastq
14
tsv
7
bed bed3+
6
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
63
Homo sapiens
Biosample type
30
tissue
21
in vitro differentiated cells
8
cell line
4
primary cell
Organ
658
pancreas
625
liver
589
connective tissue
426
adipose tissue
311
epithelium
188
heart
165
vasculature
164
brain
159
blood vessel
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
63
AMP
Genome assembly (visualization)
63
hg19
35
GRCh38
1
hg18
Lab
63
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
3
inconsistent control read length
BIOSAMPLE
ASSAY
63 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
DNase-seq
RRBS
tissue
retina
15
3
pigmented layer of retina
12
in vitro differentiated cells
pancreatic endoderm
13
4
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
primary cell
retinal pigment epithelial cell
2
1
1
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