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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
223
ChIP-seq
36
DNase-seq
36
total RNA-seq
32
ATAC-seq
6
pCHi-C
4
small RNA-seq
3
Hi-C
3
RRBS
3
single cell RNA-seq
1
FAIRE-seq
Assay category
223
DNA binding
69
DNA accessibility
43
Transcription
3
3D chromatin structure
3
DNA methylation
Target of assay
190
histone
190
histone modification
120
narrow histone mark
70
broad histone mark
32
control
4
RNA binding protein
4
transcription factor
Date released
107
October, 2019
91
November, 2017
37
June, 2019
32
February, 2023
28
May, 2019
19
July, 2019
16
October, 2017
13
February, 2020
2
March, 2020
2
November, 2018
Available data
250
bam
236
bed narrowPeak
228
bigWig
133
bigBed narrowPeak
118
tagAlign
51
bed broadPeak
42
bigBed broadPeak
39
bed bed3+
31
tsv
21
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
347
Homo sapiens
Biosample type
321
tissue
26
primary cell
Organ
791
liver
760
pancreas
683
connective tissue
491
adipose tissue
393
heart
368
epithelium
307
kidney
286
brain
236
vasculature
230
blood vessel
158
bone element
141
artery
122
limb
96
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
347
AMP
Genome assembly (visualization)
223
GRCh38
198
hg19
Lab
347
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
pericardium
BIOSAMPLE
ASSAY
347 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
FAIRE-seq
tissue
brain
20
14
1
1
1
layer of hippocampus
23
islet of Langerhans
2
14
2
4
retina
3
3
15
caudate nucleus
15
1
1
+ See 79 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
retinal pigment epithelial cell
3
1
1
brain pericyte
1
1
+ See 3 more…
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