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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
81
total RNA-seq
40
ATAC-seq
22
DNase-seq
5
ChIP-seq
4
pCHi-C
1
RRBS
Assay category
81
Transcription
62
DNA accessibility
5
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
150
February, 2021
39
February, 2023
25
June, 2019
21
October, 2019
1
February, 2020
1
July, 2019
Available data
91
bam
88
txt
82
bigWig
63
tsv
59
bed narrowPeak
24
bigBed narrowPeak
22
bed bed3+
22
bed broadPeak
22
bigBed broadPeak
4
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
237
Homo sapiens
Biosample type
232
tissue
5
primary cell
Organ
791
liver
760
pancreas
683
connective tissue
491
adipose tissue
393
heart
368
epithelium
307
kidney
286
brain
236
vasculature
230
blood vessel
158
bone element
141
artery
122
limb
96
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
237
AMP
1
T1D
Genome assembly (visualization)
122
hg19
90
GRCh38
Lab
237
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
BIOSAMPLE
ASSAY
237 results
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RNA microarray
total RNA-seq
ATAC-seq
DNase-seq
ChIP-seq
pCHi-C
RRBS
tissue
bone element
84
bone tissue
58
islet of Langerhans
14
1
2
4
retina
3
15
3
pigmented layer of retina
2
12
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primary cell
retinal pigment epithelial cell
1
3
1
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