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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
ChIP-seq
19
ATAC-seq
19
total RNA-seq
8
DNase-seq
4
pCHi-C
4
single cell RNA-seq
2
Capture-C
2
RRBS
1
Hi-C
1
small RNA-seq
Assay category
82
DNA binding
27
DNA accessibility
24
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
46
histone
46
histone modification
24
broad histone mark
24
transcription factor
21
narrow histone mark
12
control
6
RNA binding protein
2
chromatin remodeller
Date released
68
August, 2017
21
June, 2019
13
February, 2023
11
February, 2021
9
July, 2019
6
November, 2020
4
August, 2021
2
April, 2018
2
July, 2018
2
May, 2021
2
October, 2019
1
August, 2018
1
March, 2020
Available data
99
bam
92
bigWig
65
bed narrowPeak
58
fastq
22
bed bed3+
21
bigBed narrowPeak
21
tsv
14
tagAlign
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3
4
bed bedgraph
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
142
Homo sapiens
Biosample type
tissue
97
in vitro differentiated cells
44
primary cell
1
stem cell
Organ
509
epithelium
441
pancreas
430
liver
137
connective tissue
103
vasculature
97
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
55
kidney
37
embryo
22
vein
21
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
141
AMP
1
T1D
Genome assembly (visualization)
111
hg19
89
GRCh38
Lab
137
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
18
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
biosample_type!
tissue
BIOSAMPLE
ASSAY
142 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
single cell RNA-seq
Capture-C
RRBS
Hi-C
small RNA-seq
in vitro differentiated cells
adipocyte
67
8
5
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
primary cell
cardiac fibroblast
5
3
1
osteoblast
2
5
1
1
mesenchymal stem cell
7
retinal pigment epithelial cell
3
1
1
pancreatic stellate cell
4
+ See 8 more…
stem cell
mesenchymal stem cell
1
See all biosamples
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