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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ATAC-seq
19
total RNA-seq
6
ChIP-seq
4
pCHi-C
1
RRBS
Assay category
29
DNA accessibility
19
Transcription
6
DNA binding
1
DNA methylation
Target of assay
4
histone
4
histone modification
4
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
31
February, 2023
23
October, 2019
3
June, 2019
1
February, 2020
1
July, 2019
Available data
34
bed narrowPeak
8
bam
7
bigWig
6
bigBed narrowPeak
5
tsv
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign
Organism
59
Homo sapiens
Biosample type
55
tissue
4
primary cell
Organ
917
pancreas
778
liver
657
connective tissue
503
epithelium
485
adipose tissue
323
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
59
AMP
Genome assembly (visualization)
31
hg19
3
GRCh38
Lab
59
AMP-T2D consortium
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
59 results
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ATAC-seq
total RNA-seq
ChIP-seq
pCHi-C
RRBS
tissue
islet of Langerhans
2
14
2
4
retina
15
3
pigmented layer of retina
12
2
pituitary gland
1
primary cell
retinal pigment epithelial cell
3
1
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