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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
208
total RNA-seq
142
ChIP-seq
7
pCHi-C
5
WGBS
4
Hi-C
3
RRBS
3
small RNA-seq
2
STARR-seq
1
ATAC-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
212
Transcription
142
DNA binding
8
DNA methylation
4
3D chromatin structure
2
DNA accessibility
1
DNA sequencing
Target of assay
109
control
24
histone
24
histone modification
13
broad histone mark
11
narrow histone mark
9
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
167
May, 2020
66
November, 2017
36
August, 2017
22
October, 2019
20
May, 2022
18
August, 2021
13
December, 2017
11
July, 2019
5
December, 2019
5
January, 2019
4
February, 2023
3
March, 2020
2
February, 2020
2
February, 2021
2
November, 2018
1
December, 2018
1
June, 2019
Available data
688
bam
628
bigWig
bed narrowPeak
465
fastq
364
bigBed narrowPeak
179
tsv
86
tagAlign
67
bed broadPeak
67
bigBed broadPeak
17
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
378
Homo sapiens
Biosample type
274
tissue
93
cell line
10
primary cell
1
in vitro differentiated cells
Organ
732
pancreas
609
connective tissue
478
adipose tissue
373
epithelium
350
liver
202
heart
171
kidney
151
bone element
103
vasculature
101
blood vessel
83
brain
67
artery
36
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
378
AMP
Genome assembly (visualization)
189
hg19
164
GRCh38
Lab
341
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
378 results
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total RNA-seq
ChIP-seq
pCHi-C
WGBS
Hi-C
RRBS
small RNA-seq
STARR-seq
ATAC-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
63
1
3
1
1
1
1
islet of Langerhans
14
2
4
1
right lobe of liver
3
3
1
2
1
retina
3
pigmented layer of retina
2
cell line
HepG2
14
71
2
1
2
2
1
primary cell
hepatocyte
5
1
1
retinal pigment epithelial cell
1
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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