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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ATAC-seq
25
ChIP-seq
19
total RNA-seq
5
pCHi-C
2
WGBS
1
RRBS
Assay category
29
DNA accessibility
25
DNA binding
19
Transcription
3
DNA methylation
Target of assay
9
control
9
histone
9
histone modification
7
transcription factor
5
narrow histone mark
4
broad histone mark
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
31
February, 2023
21
October, 2019
8
November, 2018
7
December, 2018
7
January, 2019
3
June, 2019
1
February, 2020
1
July, 2019
1
March, 2020
1
October, 2017
Available data
47
bed narrowPeak
31
bam
24
fastq
22
bigWig
19
bigBed narrowPeak
6
tsv
5
bed bed3+
5
bed broadPeak
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
Organism
81
Homo sapiens
Biosample type
77
tissue
4
primary cell
Organ
939
pancreas
728
liver
675
connective tissue
502
epithelium
489
adipose tissue
363
heart
276
kidney
248
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
urinary bladder
Project
81
AMP
Genome assembly (visualization)
43
hg19
17
GRCh38
Lab
81
AMP-T2D consortium
files.file_type!
bigBed broadPeak
organ_slims!
urinary bladder
BIOSAMPLE
ASSAY
81 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
pCHi-C
WGBS
RRBS
tissue
spleen
1
20
1
2
islet of Langerhans
1
2
14
4
retina
15
3
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
3
1
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