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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ChIP-seq
36
ATAC-seq
26
total RNA-seq
4
Hi-C
4
pCHi-C
Assay category
71
DNA binding
36
DNA accessibility
26
Transcription
4
3D chromatin structure
DNA methylation
Target of assay
52
histone
52
histone modification
34
broad histone mark
18
control
18
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
86
October, 2019
31
February, 2023
7
May, 2019
6
February, 2021
4
February, 2020
4
July, 2019
3
June, 2019
Available data
125
bed narrowPeak
120
bam
96
bigWig
90
bigBed narrowPeak
40
bed bed3+
40
bed broadPeak
bigBed broadPeak
12
tsv
Organism
141
Homo sapiens
Biosample type
138
tissue
3
primary cell
Organ
886
pancreas
721
liver
668
connective tissue
483
adipose tissue
449
epithelium
353
heart
272
kidney
246
brain
216
vasculature
215
blood vessel
159
bone element
137
artery
85
limb
69
blood
69
bodily fluid
57
musculature of body
56
eye
41
nerve
37
embryo
22
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
141
AMP
Genome assembly (visualization)
89
hg19
61
GRCh38
Lab
141
AMP-T2D consortium
files.file_type!
bigBed broadPeak
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
141 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
tissue
tibial nerve
35
1
5
tibial artery
23
1
1
islet of Langerhans
3
1
14
4
retina
15
3
pigmented layer of retina
12
2
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primary cell
retinal pigment epithelial cell
3
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